Publications
PubMed · bioRxiv · Google Scholar · ORCID
| Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq Vazquez SE, Mann SA, Bodansky A, Kung AF, Quandt Z, Ferré MNE, Landegren N, Eriksson D, Bastard P, Zhang S-Y, Liu J, Mitchell AM, Mandel-Brehm C, Miao B, Sowa G, Zorn K, Chan AY, Shimizu C, Tremoulet A, Lynch K, Wilson MR, Kampe O, Dobbs K, Delmonte OM, Notarangelo LD, Burns JC, Casanova J-L, Lionakis MS, Torgerson TR, Anderson MS, DeRisi JL. bioRxiv (2022) |
| Human sialomucin CD164 is an essential entry factor for lymphocytic choriomeningitis virus Liu J, Knopp KA, Rackaityte E, Wang CY, Laurie MT, Sunshine S, Puschnik AS, DeRisi JL. Accepted at mBio (2022) |
| Viral Load Among Vaccinated and Unvaccinated, Asymptomatic and Symptomatic Persons Infected with the SARS-CoV-2 Delta Variant Acharya CB, Schrom J, Mitchell AM, Coil DA, Marquez C, Rojas S, Wang CY, Liu J, Pilarowski G, Solis L, Georgian E, Belafksy S, Petersen M, DeRisi J, Michelmore R, Havlir D. Open Forum Infectious Diseases (2022): ofac135 |
| SARS-CoV-2 transmission dynamics and immune responses in a household of vaccinated persons Liu J, Laurie MT, Rubio L, Vazquez SE, Sunshine S, Mitchell AM, Hapte-Selassie M, Mann SA, Pilarowski G, Black D, Marquez C, Rojas S, Lionakis MS, Petersen M, Whitman JD, Jain V, Anderson M, Havlir D, DeRisi J. Clinical Infectious Diseases (2022): ciac029. |
| SARS-CoV-2 variant exposures elicit antibody responses with differential cross-neutralization of established and emerging strains including Delta and Omicron Laurie MT, Liu J, Sunshine S, Peng J, Black D, Mitchell AM, Mann SA, Pilarowski G, Zorn KC, Rubio L, Bravo S, Marquez C, Sabatino Jr. JJ, Mittl K, Petersen M, Havlir D, DeRisi J. The Journal of Infectious Disease (2022): jiab635. |
| Estimation of secondary household attack rates for emergent spike L452R SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco Peng J*, Liu J*, Mann SA*, Mitchell AM*, Laurie MT*, Sunshine S*, Pilarowski G*, Ayscue P*, Kistler A, Vanaerschot M, Li LM, McGeever A, Chow ED, Marquez C, Nakamura R, Rubio L, Chamie G, Jones D, Jacobo J, Rojas S, Rojas S, Tulier-Laiwa V, Black D, Martinez J, Naso J, Schwab J, Petersen M, Havlir D, DeRisi J, IDseq Team. Clinical Infectious Diseases 74.1 (2022): 32-39. |
| Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms Song E, Bartley CM, Chow RD, … Liu J, … DeRisi JL, Iwasaki A, Pleasure SJ, Wilson MR, Farhadian SF. Cell Reports Medicine 2.5 (2021): 100288. |
| Performance Characteristics of a Rapid SARS-CoV-2 Antigen Detection Assay at a Public Plaza Testing Site in San Francisco Pilarowski G, Lebel P, Sunshine S, Liu J, Crawford E, Marquez C, Rubio L, Chamie G, Martinez J, Peng J, Black D, Wu W, Pak J, Laurie MT, Jones D, Miller S, Jacobo J, Rojas S, Rojas S, Nakamura R, Tulier-Laiwa V, Petersen M, Havlir DV, DeRisi J, The CLIAHUB Consortium. The Journal of Infectious Disease 223.7 (2021): 1139-1144. |
| Rapid deployment of SARS-CoV-2 testing: The CLIAHUB Crawford ED, Acosta I, Ahyong V, … Liu J, … DeRisi JL. PLoS Pathogens 16.10 (2020): e1008966. Mentioned on This Week in Virology episode 677 |
| High-resolution epitope mapping of anti-Hu and anti-Yo autoimmunity by programmable phage display O’Donovan B, Mandel-Brehm C, Vazquez SE, Liu J, Parent AV, Anderson MS, Kassimatis T, Zekeridou A, Hauser SL, Pittock SJ, Chow E, Wilson MR, DeRisi JL. Brain Communications 2.2 (2020): fcaa059. |
| Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination Bhattacharyya RP, Bandyopadhyay N, Ma P, Son SS, Liu J, He LL, Wu L, Khafizov R, Boykin R, Cerqueira GC, Pironti A, Rudy RF, Patel MM, Yang R, Skerry J, Nazarian E, Musser KA, Taylor J, Pierce VM, Earl AM, Cosimi LA, Shoresh N, Beechem J, Livny J, Hung DT. Nature Medicine 25.12 (2019): 1858-1864. |
| Rapid identification and phylogenetic classification of diverse bacterial pathogens in a multiplexed hybridization assay targeting ribosomal RNA Bhattacharyya RP, Walker M, Boykin R, Son SS, Liu J, Hachey AC, Ma P, Wu L, Choi K, Cummins KC, Benson M, Skerry J, Ryu H, Wong SY, Goldberg MB, Han J, Pierce VM, Cosimi LA, Shoresh N, Livny J, Beechem J, Hung DT. Scientific Reports 9.1 (2019): 1-13. |
| Low-Cost Touchscreen Driven Programmable Dual Syringe Pump for Life Science Applications Garcia VE*, Liu J*, DeRisi JL. HardwareX 4 (2018): e00027. [Code] [3D Printed Parts] |
| Rapid Phenotypic Antibiotic Susceptibility Testing Through RNA Detection Bhattacharyya RP, Liu J, Ma P, Bandyopadhyay N, Livny J, Hung DT. Open Forum Infectious Diseases 4.1 (2017): S33. |
| Liu J, Laurie MT, Rubio L, Vazquez SE, Sunshine S, Mitchell AM, Hapte-Selassie M, Mann SA, Pilarowski G, Black D, Marquez C, Rojas S, Lionakis MS, Petersen M, Whitman JD, Jain V, Anderson M, Havlir D, and DeRisi JL. SARS-CoV-2 transmission dynamics and immune responses in a household of vaccinated persons. 52nd COVID Human Genetic Effort (CHGE) Meeting. Online. Sept 13, 2021. (Oral presentation) |
| Liu J, Knopp KA, DeRisi J. Identifying host factors that influence LCMV infection. UC Berkeley-UCSF Graduate Group in Bioengineering Annual Retreat. Santa Cruz, CA. Oct 25-27, 2019. (Poster presentation) |
| Bhattacharyya RP, Liu J, Rudy RF, Patel MM, Livny J, Hung DT. Rapid antibiotic susceptibility testing in Klebsiella pneumoniae and Acinetobacter baumannii using RNA transcriptional signatures. Cellular and Molecular Bioengineering Annual Conference. Kohala Coast, HI. Jan 3-7, 2017. (Poster presentation) |
| Bhattacharyya RP, Liu J, Livny J, Hung DT. Failure modes in rapid antibiotic susceptibility testing using RNA-hybridizing molecular probes. Annual Broad Research Associate and Technical Specialists Poster Session. Cambridge, MA. Dec 1, 2016. (Poster presentation) |
| Liu J, Chen MB, Kamm RD. Exploration of the role of platelets in tumor cell extravasation using microfluidic devices. Znaty-Merck Research Prize Presentations. Cambridge, MA. May 1, 2015. (Oral presentation) |
| Community Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 Disproportionately Affects the Latinx Population During Shelter-in-Place in San Francisc Chamie G, Marquez C, Crawford E, Peng J, Petersen M, Schwab D, … CLIAHUB Consortium, … and Havlir DV. Clinical Infectious Diseases 73.S2 (2021): S127-S135. |
| SARS-CoV-2 PCR and antibody testing for an entire rural community: methods and feasibility of high-throughput testing procedures Appa A, Chamie G, Sawyer A, Baltzell K, Dippell K, Ribeiro S, … CLIAHUB Consortium, … and Greenhouse B. Archives of Public Health 79.1 (2021): 1-7 |
| The COVID-19 symptom to isolation cascade in a Latinx community: a call to action Rubio LA, Peng J, Rojas S, Rojas S, Crawford E, Black D, … CLIAHUB Consortium, … and Marquez C. Open forum infectious diseases 8.2 (2021): ofab023 |
| Universal polymerase chain reaction and antibody testing demonstrate little to no transmission of severe acute respiratory syndrome coronavirus 2 in a rural community Appa A, Takahashi S, Rodriguez-Barraquer I, Chamie G, Sawyer A, Duarte E, … Greenhouse B, and the CLIAHUB Consortium. Open forum infectious diseases. 8.1 (2021): ofaa531. |
| Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by reverse transcription-PCR Vanaerschot M, Mann SA, Webber JT, KammJ, Bell SM, Bell J, … CLIAHUB Consortium, … and Crawford ED. Journal of clinical microbiology 59.1 (2020): e02369-20. |
| Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19 Shah SJ, Barish PN, Prasad PA, Kistler A, Neff N, Kamm J, … CLIAHUB Consortium, … and Langelier C. EClinicalMedicine 27 (2020): 100518. |